IL_5WE6_064

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5WE6|1|A|A|1801, 5WE6|1|A|C|1816, 5WE6|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_064 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0769

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5WE6|1|A|U|1798
5WE6|1|A|G|1799
5WE6|1|A|C|1800
5WE6|1|A|A|1801
5WE6|1|A|A|1802
5WE6|1|A|A|1803
5WE6|1|A|C|1804
*
5WE6|1|A|G|1813
5WE6|1|A|G|1814
5WE6|1|A|A|1815
5WE6|1|A|C|1816
5WE6|1|A|G|1817
5WE6|1|A|U|1818
5WE6|1|A|A|1819
5WE6|1|A|U|1820
5WE6|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA