IL_5WF0_034

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5WF0|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_034 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.198

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5WF0|1|A|U|1018
5WF0|1|A|U|1019
5WF0|1|A|A|1020
5WF0|1|A|A|1021
5WF0|1|A|G|1022
5WF0|1|A|U|1023
5WF0|1|A|G|1024
*
5WF0|1|A|C|1140
5WF0|1|A|U|1141
5WF0|1|A|A|1142
5WF0|1|A|A|1143
5WF0|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36 1

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13