IL_5WF0_143

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5WF0|1|a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_143 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5WF0|1|a|U|684
5WF0|1|a|G|685
5WF0|1|a|U|686
5WF0|1|a|A|687
5WF0|1|a|G|688
*
5WF0|1|a|C|699
5WF0|1|a|G|700
5WF0|1|a|U|701
5WF0|1|a|A|702
5WF0|1|a|G|703
5WF0|1|a|A|704
5WF0|1|a|G|705
5WF0|1|a|A|706

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11