IL_5WFS_118

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGAA*UGGC

Length

10 nucleotides

Bulged bases

5WFS|1|a|G|64, 5WFS|1|a|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_118 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.3365

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

5WFS|1|a|G|61
5WFS|1|a|U|62
5WFS|1|a|C|63
5WFS|1|a|G|64
5WFS|1|a|A|65
5WFS|1|a|A|66
*
5WFS|1|a|U|103
5WFS|1|a|G|104
5WFS|1|a|G|105
5WFS|1|a|C|106

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20