IL_5WLC_028

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5WLC|1|L1|C|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_028 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2109

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5WLC|1|L1|U|113
5WLC|1|L1|C|114
5WLC|1|L1|G|115
5WLC|1|L1|U|116
*
5WLC|1|L1|A|300
5WLC|1|L1|A|301

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain L8

rpS8_eS8

Chain LD

rpS11_uS17