IL_5WLC_033

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUG*CUCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_033 not in the Motif Atlas

Geometric match to IL_6JDV_004

Geometric discrepancy: 0.2526

The information below is about IL_6JDV_004

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5WLC|1|L1|A|226
5WLC|1|L1|U|227
5WLC|1|L1|G|228
*
5WLC|1|L1|C|237
5WLC|1|L1|U|238
5WLC|1|L1|C|239
5WLC|1|L1|U|240
5WLC|1|L1|U|241

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain SP

Utp20