IL_5WLC_037

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5WLC|1|L1|U|313, 5WLC|1|L1|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_037 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.131

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5WLC|1|L1|U|311
5WLC|1|L1|A|312
5WLC|1|L1|U|313
5WLC|1|L1|C|314
5WLC|1|L1|A|315
5WLC|1|L1|A|316
*
5WLC|1|L1|U|348
5WLC|1|L1|U|349
5WLC|1|L1|U|350
5WLC|1|L1|C|351
5WLC|1|L1|A|352
5WLC|1|L1|A|353
5WLC|1|L1|C|354
5WLC|1|L1|G|355

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L8

rpS8_eS8

Chain LD

rpS11_uS17