IL_5WLC_042

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

5WLC|1|L1|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_042 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.214

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5WLC|1|L1|C|443
5WLC|1|L1|C|444
5WLC|1|L1|A|445
5WLC|1|L1|A|446
5WLC|1|L1|U|447
5WLC|1|L1|C|448
*
5WLC|1|L1|G|458
5WLC|1|L1|G|459
5WLC|1|L1|A|460
5WLC|1|L1|G|461

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain LF

rpS24_eS24

Chain NC

Lcp5