IL_5WLC_048

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_048 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.244

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5WLC|1|L1|C|627
5WLC|1|L1|G|628
5WLC|1|L1|U|629
5WLC|1|L1|A|630
5WLC|1|L1|G|631
*
5WLC|1|L1|U|968
5WLC|1|L1|C|969
5WLC|1|L1|A|970
5WLC|1|L1|A|971
5WLC|1|L1|G|972

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NF

rpS13_uS15