IL_5WLC_055

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_055 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1951

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5WLC|1|L1|C|990
5WLC|1|L1|G|991
5WLC|1|L1|A|992
5WLC|1|L1|A|993
5WLC|1|L1|G|994
*
5WLC|1|L1|C|1010
5WLC|1|L1|G|1011
5WLC|1|L1|U|1012
5WLC|1|L1|A|1013
5WLC|1|L1|G|1014

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NJ

Rrp5