IL_5WYJ_010

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AAA*UGUUUAAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_010 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.223

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5WYJ|1|5A|A|93
5WYJ|1|5A|A|94
5WYJ|1|5A|A|95
*
5WYJ|1|5A|U|149
5WYJ|1|5A|G|150
5WYJ|1|5A|U|151
5WYJ|1|5A|U|152
5WYJ|1|5A|U|153
5WYJ|1|5A|A|154
5WYJ|1|5A|A|155
5WYJ|1|5A|U|156
5WYJ|1|5A|U|157

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AG

Utp17