IL_5WYJ_021

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_021 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1363

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5WYJ|1|5A|G|346
5WYJ|1|5A|U|347
5WYJ|1|5A|U|348
5WYJ|1|5A|G|349
*
5WYJ|1|5A|C|375
5WYJ|1|5A|U|376
5WYJ|1|5A|U|377
5WYJ|1|5A|C|378

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain K1

KRR1 small subunit processome component