IL_5WYJ_027

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_027 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1486

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5WYJ|1|5A|G|505
5WYJ|1|5A|G|506
5WYJ|1|5A|U|507
*
5WYJ|1|5A|A|529
5WYJ|1|5A|A|530
5WYJ|1|5A|C|531

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain 3D

Nucleolar protein 56

Chain UA

Helical domain protein