IL_5WYJ_037
3D structure
- PDB id
- 5WYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.7 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 5WYJ|1|SA|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WYJ_037 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.2331
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5WYJ|1|SA|U|144
5WYJ|1|SA|A|145
5WYJ|1|SA|U|146
5WYJ|1|SA|A|147
5WYJ|1|SA|A|148
5WYJ|1|SA|C|149
*
5WYJ|1|SA|G|165
5WYJ|1|SA|C|166
5WYJ|1|SA|U|167
5WYJ|1|SA|A|168
5WYJ|1|SA|A|169
5WYJ|1|SA|U|170
5WYJ|1|SA|A|171
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SH
- 40S ribosomal protein S6-A
Coloring options: