IL_5WYJ_039

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_039 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.4039

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5WYJ|1|SA|C|186
5WYJ|1|SA|G|187
5WYJ|1|SA|A|188
5WYJ|1|SA|C|189
*
5WYJ|1|SA|G|196
5WYJ|1|SA|A|197
5WYJ|1|SA|A|198
5WYJ|1|SA|G|199

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain U3

Utp20