IL_5WYJ_054

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AGUC*GCU

Length

7 nucleotides

Bulged bases

5WYJ|1|SA|U|558

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_054 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2667

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5WYJ|1|SA|A|550
5WYJ|1|SA|G|557
5WYJ|1|SA|U|558
5WYJ|1|SA|C|559
*
5WYJ|1|SA|G|586
5WYJ|1|SA|C|587
5WYJ|1|SA|U|588

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain Sf

40S ribosomal protein S30-A

Chain UC

Unassigned helices