IL_5WYJ_057

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_057 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1641

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5WYJ|1|SA|A|865
5WYJ|1|SA|G|866
*
5WYJ|1|SA|C|962
5WYJ|1|SA|A|963
5WYJ|1|SA|U|964
5WYJ|1|SA|U|965

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-A