IL_5WYJ_058

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

5WYJ|1|SA|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_058 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.2967

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5WYJ|1|SA|G|867
5WYJ|1|SA|G|868
5WYJ|1|SA|A|869
*
5WYJ|1|SA|U|958
5WYJ|1|SA|U|959
5WYJ|1|SA|U|960
5WYJ|1|SA|U|961

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A