IL_5WYJ_094

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5WYJ|1|SA|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_094 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.4431

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5WYJ|1|SA|G|143
5WYJ|1|SA|U|144
5WYJ|1|SA|A|145
5WYJ|1|SA|U|146
5WYJ|1|SA|A|147
5WYJ|1|SA|A|148
5WYJ|1|SA|C|149
*
5WYJ|1|SA|G|165
5WYJ|1|SA|C|166
5WYJ|1|SA|U|167
5WYJ|1|SA|A|168
5WYJ|1|SA|A|169
5WYJ|1|SA|U|170
5WYJ|1|SA|A|171
5WYJ|1|SA|C|172

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S6-A