IL_5WYJ_100

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GACA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_100 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3981

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5WYJ|1|SA|G|1233
5WYJ|1|SA|A|1234
5WYJ|1|SA|C|1235
5WYJ|1|SA|A|1236
*
5WYJ|1|SA|U|1249
5WYJ|1|SA|U|1250
5WYJ|1|SA|U|1251
5WYJ|1|SA|C|1252

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E3

Essential nuclear protein 1

Chain SN

40S ribosomal protein S12

Chain Sg

Ubiquitin-40S ribosomal protein S31