IL_5WYK_009

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AA*UGUUUAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_009 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2424

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

5WYK|1|5A|A|94
5WYK|1|5A|A|95
*
5WYK|1|5A|U|149
5WYK|1|5A|G|150
5WYK|1|5A|U|151
5WYK|1|5A|U|152
5WYK|1|5A|U|153
5WYK|1|5A|A|154
5WYK|1|5A|A|155
5WYK|1|5A|U|156

Current chains

Chain 5A

5ETS RNA

Nearby chains