IL_5WYK_010

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_010 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1586

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5WYK|1|5A|G|97
5WYK|1|5A|G|98
5WYK|1|5A|U|99
*
5WYK|1|5A|A|145
5WYK|1|5A|G|146
5WYK|1|5A|C|147

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AB

Utp5