IL_5WYK_012

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUCGC*GUC

Length

8 nucleotides

Bulged bases

5WYK|1|5A|U|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_012 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2192

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5WYK|1|5A|G|107
5WYK|1|5A|U|108
5WYK|1|5A|C|109
5WYK|1|5A|G|110
5WYK|1|5A|C|111
*
5WYK|1|5A|G|135
5WYK|1|5A|U|136
5WYK|1|5A|C|137

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AF

Utp15

Chain UB

Helical domain protein