IL_5WYK_021

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_021 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.1525

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5WYK|1|5A|G|346
5WYK|1|5A|U|347
5WYK|1|5A|U|348
5WYK|1|5A|G|349
*
5WYK|1|5A|C|375
5WYK|1|5A|U|376
5WYK|1|5A|U|377
5WYK|1|5A|C|378

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain K1

KRR1 small subunit processome component