IL_5WYK_025

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CG*UCUG

Length

6 nucleotides

Bulged bases

5WYK|1|5A|C|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_025 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.3932

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

5WYK|1|5A|C|413
5WYK|1|5A|G|414
*
5WYK|1|5A|U|440
5WYK|1|5A|C|441
5WYK|1|5A|U|442
5WYK|1|5A|G|443

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U5

Ribosome biogenesis protein UTP30