IL_5WYK_037

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

5WYK|1|SA|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_037 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2219

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5WYK|1|SA|U|144
5WYK|1|SA|A|145
5WYK|1|SA|U|146
5WYK|1|SA|A|147
5WYK|1|SA|A|148
5WYK|1|SA|C|149
*
5WYK|1|SA|G|165
5WYK|1|SA|C|166
5WYK|1|SA|U|167
5WYK|1|SA|A|168
5WYK|1|SA|A|169
5WYK|1|SA|U|170
5WYK|1|SA|A|171

Current chains

Chain SA

18S ribosomal RNA

Nearby chains