IL_5WYK_052

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_052 not in the Motif Atlas

Geometric match to IL_1SA9_002

Geometric discrepancy: 0.2382

The information below is about IL_1SA9_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5WYK|1|SA|U|517
5WYK|1|SA|A|518
5WYK|1|SA|C|519
5WYK|1|SA|A|520
*
5WYK|1|SA|U|532
5WYK|1|SA|U|533
5WYK|1|SA|A|534
5WYK|1|SA|A|535

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain B1

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SZ

40S ribosomal protein S24-A