IL_5WYK_069

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCUAG*CUAAAAG

Length

13 nucleotides

Bulged bases

5WYK|1|SA|A|1755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_069 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3496

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5WYK|1|SA|C|1644
5WYK|1|SA|G|1645
5WYK|1|SA|C|1646
5WYK|1|SA|U|1647
5WYK|1|SA|A|1648
5WYK|1|SA|G|1649
*
5WYK|1|SA|C|1751
5WYK|1|SA|U|1752
5WYK|1|SA|A|1753
5WYK|1|SA|A|1754
5WYK|1|SA|A|1755
5WYK|1|SA|A|1756
5WYK|1|SA|G|1757

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain BB

U3 small nucleolar RNA-associated protein 12

Chain BC

U3 small nucleolar RNA-associated protein 13