IL_5WYK_071

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_071 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.2661

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5WYK|1|SA|C|1653
5WYK|1|SA|G|1654
5WYK|1|SA|A|1655
5WYK|1|SA|U|1656
*
5WYK|1|SA|A|1744
5WYK|1|SA|G|1745
5WYK|1|SA|A|1746
5WYK|1|SA|G|1747

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain BC

U3 small nucleolar RNA-associated protein 13