IL_5XYM_029
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5XYM|1|A|A|1278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_029 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0983
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5XYM|1|A|C|1119
5XYM|1|A|U|1120
5XYM|1|A|A|1121
5XYM|1|A|A|1122
5XYM|1|A|G|1123
*
5XYM|1|A|C|1275
5XYM|1|A|G|1276
5XYM|1|A|A|1277
5XYM|1|A|A|1278
5XYM|1|A|G|1279
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
- Chain a
- Uncharacterized protein bL37
Coloring options: