IL_5XYU_026
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGAAAACU*GGCGUG
- Length
- 14 nucleotides
- Bulged bases
- 5XYU|1|A|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYU_026 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.3047
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5XYU|1|A|U|585
5XYU|1|A|G|586
5XYU|1|A|A|587
5XYU|1|A|A|588
5XYU|1|A|A|589
5XYU|1|A|A|590
5XYU|1|A|C|591
5XYU|1|A|U|592
*
5XYU|1|A|G|608
5XYU|1|A|G|609
5XYU|1|A|C|610
5XYU|1|A|G|611
5XYU|1|A|U|612
5XYU|1|A|G|613
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain H
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
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