IL_5XYU_030
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYU_030 not in the Motif Atlas
- Geometric match to IL_5J7L_034
- Geometric discrepancy: 0.1123
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5XYU|1|A|G|653
5XYU|1|A|G|654
5XYU|1|A|A|655
5XYU|1|A|A|656
5XYU|1|A|U|657
5XYU|1|A|U|658
*
5XYU|1|A|A|692
5XYU|1|A|G|693
5XYU|1|A|G|694
5XYU|1|A|A|695
5XYU|1|A|A|696
5XYU|1|A|C|697
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18 2
Coloring options: