IL_5XYU_031

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGUAG*CGCAGAUA

Length

13 nucleotides

Bulged bases

5XYU|1|A|A|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_031 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.3471

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5XYU|1|A|U|664
5XYU|1|A|G|665
5XYU|1|A|U|666
5XYU|1|A|A|667
5XYU|1|A|G|668
*
5XYU|1|A|C|679
5XYU|1|A|G|680
5XYU|1|A|C|681
5XYU|1|A|A|682
5XYU|1|A|G|683
5XYU|1|A|A|684
5XYU|1|A|U|685
5XYU|1|A|A|686

Current chains

Chain A

16S RNA

Nearby chains

Chain K

30S ribosomal protein S11