IL_5Y36_004

3D structure

PDB id

5Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.2 Å

Loop

Sequence

ACC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Y36_004 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.2

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5Y36|1|B|A|84
5Y36|1|B|C|85
5Y36|1|B|C|86
*
5Y36|1|B|G|92
5Y36|1|B|G|93
5Y36|1|B|U|94

Current chains

Chain B

single-guide RNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1