IL_5YLZ_009
3D structure
- PDB id
- 5YLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CA*UUAG
- Length
- 6 nucleotides
- Bulged bases
- 5YLZ|1|F|U|24, 5YLZ|1|F|A|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5YLZ_009 not in the Motif Atlas
- Geometric match to IL_3IGI_013
- Geometric discrepancy: 0.377
- The information below is about IL_3IGI_013
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
5YLZ|1|D|C|58
5YLZ|1|D|A|59
*
5YLZ|1|F|U|23
5YLZ|1|F|U|24
5YLZ|1|F|A|25
5YLZ|1|F|G|26
Current chains
- Chain D
- U6 snRNA
- Chain F
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- mRNA/intron lariat
- Chain J
- Pre-mRNA-splicing factor CEF1
- Chain Q
- Pre-mRNA-processing protein 45
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