IL_5Z3G_016
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- AUUU*AUAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_016 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.2898
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5Z3G|1|A|A|428
5Z3G|1|A|U|429
5Z3G|1|A|U|430
5Z3G|1|A|U|431
*
5Z3G|1|A|A|628
5Z3G|1|A|U|629
5Z3G|1|A|A|630
5Z3G|1|A|U|631
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain S
- 60S ribosomal protein L16-A
- Chain i
- 60S ribosomal protein L32
- Chain j
- 60S ribosomal protein L33-A
Coloring options: