IL_5Z3G_025

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_025 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.2737

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5Z3G|1|A|G|725
5Z3G|1|A|G|726
5Z3G|1|A|G|727
5Z3G|1|A|G|728
*
5Z3G|1|A|U|741
5Z3G|1|A|G|742
5Z3G|1|A|C|743
5Z3G|1|A|A|744
5Z3G|1|A|C|745

Current chains

Chain A

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L18-A