IL_5Z3G_029
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5Z3G|1|A|A|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_029 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.5177
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5Z3G|1|A|G|805
5Z3G|1|A|A|806
5Z3G|1|A|A|807
5Z3G|1|A|A|808
5Z3G|1|A|G|809
*
5Z3G|1|A|C|931
5Z3G|1|A|U|932
5Z3G|1|A|A|933
5Z3G|1|A|G|934
5Z3G|1|A|U|935
5Z3G|1|A|A|936
5Z3G|1|A|G|937
5Z3G|1|A|C|938
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain d
- Unassigned
- Chain n
- 60S ribosomal protein L37-A
Coloring options: