IL_5Z3G_030

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UUUC*GAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_030 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2631

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5Z3G|1|A|U|954
5Z3G|1|A|U|955
5Z3G|1|A|U|956
5Z3G|1|A|C|957
*
5Z3G|1|A|G|964
5Z3G|1|A|A|965
5Z3G|1|A|U|966
5Z3G|1|A|A|967

Current chains

Chain A

25S rRNA

Nearby chains