IL_5Z3G_034

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UU*AGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_034 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2934

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

5Z3G|1|A|U|986
5Z3G|1|A|U|987
*
5Z3G|1|A|A|1062
5Z3G|1|A|G|1063
5Z3G|1|A|G|1097
5Z3G|1|A|A|1098

Current chains

Chain A

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L7-A