IL_5Z3G_039
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 5Z3G|1|A|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_039 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.1791
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
5Z3G|1|A|C|1376
5Z3G|1|A|G|1377
5Z3G|1|A|U|1378
*
5Z3G|1|A|A|1428
5Z3G|1|A|G|1429
5Z3G|1|A|U|1430
5Z3G|1|A|G|1431
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain Z
- Protein MAK16
- Chain i
- 60S ribosomal protein L32
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