IL_5Z3G_055
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CAC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_055 not in the Motif Atlas
- Geometric match to IL_5F5F_001
- Geometric discrepancy: 0.1705
- The information below is about IL_5F5F_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
5Z3G|1|A|C|3233
5Z3G|1|A|A|3234
5Z3G|1|A|C|3235
*
5Z3G|1|A|G|3252
5Z3G|1|A|G|3253
5Z3G|1|A|G|3254
Current chains
- Chain A
- 25S rRNA
Nearby chains
No other chains within 10ÅColoring options: