IL_5Z3G_062
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 5Z3G|1|B|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_062 not in the Motif Atlas
- Homologous match to IL_5TBW_145
- Geometric discrepancy: 0.2373
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5Z3G|1|B|U|64
5Z3G|1|B|A|65
5Z3G|1|B|A|66
*
5Z3G|1|B|U|93
5Z3G|1|B|C|94
5Z3G|1|B|G|95
5Z3G|1|B|A|96
Current chains
- Chain B
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L35-A
- Chain n
- 60S ribosomal protein L37-A
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