IL_5Z3G_065
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CUGGU*GCCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_065 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.3304
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5Z3G|1|A|C|125
5Z3G|1|A|U|126
5Z3G|1|A|G|127
5Z3G|1|A|G|128
5Z3G|1|A|U|129
*
5Z3G|1|A|G|139
5Z3G|1|A|C|140
5Z3G|1|A|C|141
5Z3G|1|A|C|142
5Z3G|1|A|G|143
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K
- 60S ribosomal protein L8-A
- Chain M
- Nucleolar protein 7
- Chain R
- 60S ribosomal protein L15-A
- Chain d
- Unassigned
- Chain l
- 60S ribosomal protein L35-A
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