IL_5Z3G_066
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CAAC*GUG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_066 not in the Motif Atlas
- Geometric match to IL_8CRE_417
- Geometric discrepancy: 0.3942
- The information below is about IL_8CRE_417
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5Z3G|1|A|C|163
5Z3G|1|A|A|164
5Z3G|1|A|A|165
5Z3G|1|A|C|166
*
5Z3G|1|A|G|256
5Z3G|1|A|U|257
5Z3G|1|A|G|258
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L13-A
- Chain Y
- ATP-dependent RNA helicase HAS1
- Chain d
- Unassigned
- Chain l
- 60S ribosomal protein L35-A
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