IL_5Z3G_070

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

5Z3G|1|A|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_070 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2815

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5Z3G|1|A|G|3102
5Z3G|1|A|A|3103
5Z3G|1|A|U|3104
5Z3G|1|A|U|3105
5Z3G|1|A|A|3106
5Z3G|1|A|U|3107
*
5Z3G|1|A|A|3127
5Z3G|1|A|G|3128
5Z3G|1|A|A|3129
5Z3G|1|A|A|3130
5Z3G|1|A|U|3131
5Z3G|1|A|C|3132

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L16-A