IL_5ZEB_035

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_035 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.2685

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5ZEB|1|A|G|996
5ZEB|1|A|G|997
5ZEB|1|A|G|998
5ZEB|1|A|C|999
*
5ZEB|1|A|G|1008
5ZEB|1|A|U|1009
5ZEB|1|A|U|1010
5ZEB|1|A|A|1011
5ZEB|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L25