IL_5ZEB_145
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5ZEB|1|a|A|512, 5ZEB|1|a|U|514, 5ZEB|1|a|A|515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEB_145 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2709
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ZEB|1|a|G|495
5ZEB|1|a|U|496
5ZEB|1|a|G|497
5ZEB|1|a|C|498
5ZEB|1|a|C|499
5ZEB|1|a|A|500
5ZEB|1|a|G|501
*
5ZEB|1|a|C|508
5ZEB|1|a|G|509
5ZEB|1|a|G|510
5ZEB|1|a|U|511
5ZEB|1|a|A|512
5ZEB|1|a|A|513
5ZEB|1|a|U|514
5ZEB|1|a|A|515
5ZEB|1|a|C|516
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: