IL_5ZEP_059

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUCC*GCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_059 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3208

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5ZEP|1|A|A|1559
5ZEP|1|A|U|1560
5ZEP|1|A|C|1561
5ZEP|1|A|C|1562
*
5ZEP|1|A|G|1609
5ZEP|1|A|C|1610
5ZEP|1|A|A|1611
5ZEP|1|A|U|1612

Current chains

Chain A

23S rRNA

Nearby chains

Chain f

30S ribosomal protein S6