IL_5ZEP_076

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

5ZEP|1|A|G|2018, 5ZEP|1|A|U|2033, 5ZEP|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_076 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0769

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5ZEP|1|A|U|2015
5ZEP|1|A|G|2016
5ZEP|1|A|C|2017
5ZEP|1|A|G|2018
5ZEP|1|A|A|2019
5ZEP|1|A|A|2020
5ZEP|1|A|G|2021
*
5ZEP|1|A|C|2030
5ZEP|1|A|G|2031
5ZEP|1|A|A|2032
5ZEP|1|A|U|2033
5ZEP|1|A|G|2034
5ZEP|1|A|U|2035
5ZEP|1|A|A|2036
5ZEP|1|A|U|2037
5ZEP|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA